Search for Softwares


Genomics Software

See also:

Alscript by Barton Group Program to format multiple sequence alignments by Geof Barton group.
Amplify Amplify is a freeware Macintosh program for simulating and testing polymerase chain reactions (PCRs).
Biocatalogue EBI software directory of general interest in molecular biology and genetics.
Bioexplorer Toolbar  An easy toolbar for NCBI databases
BioPAX  Develop a common exchange format for biological pathways data.
Biotech Resource at  Free Software that is Relevant to the Molecular Biology and Structural Biology Fields
BLAST at NCBI Blast open source software
 BoxShade  Pretty Printing and Shading of Multiple-Alignment files from
Cn3D Application that allows to view 3D structures, at NCBI
Basic bioinformatics analyses and data management - free download
DomainParser A protein domain partition program
EMBOSS EMBOSS is a package of FREE open source software for sequence analysis
E-cell Simulating intracellular molecular processes of living cells project
eXtropia Several free web tools
Fasta Open source for Fasta
Genamics Genamics SoftwareSeek is a respository and database of freely-distributable and commercial tools for use in molecular biology and biochemistry
GeneDoc Multiple sequence alignment editor, analyzer & shading utility for windows
Genesis Information about GEneral NEural SImulation System
Globin Several free tools
GNU Free software foundation - several tools
HMMER HMMER 2.2 Profile hidden Markov models for biological sequence analysis 
NIH Image Image analysis program for Macintosh from NIH
MassARRAY™ RT Software (Sequenom)   
MatInspector Detection of transcription factor binding sites
Matt's Script Archive Several free Perl scripts
MB Shotcuts List of several free molecular biology softwares
MolBio Links Links to several molecular biology toos
Molecular Biology List of many free software package for Mac and PC
Multicoil Program to predict coiled coil regions in proteins
Protein Multiple Sequence Alignment Software
MutationSurveyor & MutationExplorer Analysis of DNA variants, SNPs and mutations
Open Informatics Open source softwares
Phred, Phrap & Consed Sequence quality and assembly softwares
Compares traces to identify heterozygous sites for SNPs
Collection of physiologic simulation software
PovChem Visualization program for PDB protein structures
Programming Libraries Bioinformatics Programming Libraries, links to lots of sites and source codes
Prospect A threading-based protein structure prediction system
R - statistical package Statistical computing and graphics software
TreeView Tree drawing software for Apple Macintosh and Windows Several ready to use tool
Staden Package A excellent package for sequence analysis and assembly
Sequence Manipulation Free suite of sequence manipulation tools
WU-BLAST Washington university BLAST archives