Clustering

From Bioalgorithm.com

clusterRepro : Reproducibility of gene expression clusters

clue : Cluster ensembles

clustTool : GUI for clustering data with spatial information

clustvarsel : Variable Selection for Model-Based Clustering

mclust : Model-Based Clustering / Normal Mixture Modeling 

geneclust : exploratory analysis of gene expression microarray data (LINUX only) 

amap : Multidimensional Analysis Package for clustering and PCA 

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Package	Maintainer	Title
adSplit	Claudio Lottaz	Annotation-Driven Clustering
clusterStab	James W. MacDonald	Compute cluster stability scores for microarray data
ctc	Antoine Lucas	Cluster and Tree Conversion.
geneRecommender	Greg Hather	A gene recommender algorithm to identify genes coexpressed with a query set of genes
hopach	Katherine S. Pollard	Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)
maanova	Lei Wu	Tools for analyzing Micro Array experiments
made4	Aedin Culhane	Multivariate analysis of microarray data using ADE4
MantelCorr	Brian Steinmeyer	Compute Mantel Cluster Correlations
Mfuzz	Matthias Futschik	Soft clustering of time series gene expression data
MLInterfaces	V. Carey	Uniform interfaces to R machine learning procedures for data in Bioconductor containers
SAGx	Per Broberg	Statistical Analysis of the GeneChip