Difference between revisions of "Search for Softwares"

From Bioalgorithm.org
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
<strong><font size="5">Genomics Software</font></strong><br />
 
<strong><font size="5">Genomics Software</font></strong><br />
 
<br />
 
<br />
<table style="WIDTH: 659px; HEIGHT: 1691px; BACKGROUND-COLOR: rgb(255,255,255)">
+
<strong>See also: [http://biosoftware.org Biosoftware.org]<br />
 +
</strong><br />
 +
<table style="BACKGROUND-COLOR: rgb(255,255,255)" height="1653" cellspacing="0" cellpadding="0" width="100%" summary="" border="1">
 
     <tbody>
 
     <tbody>
 
         <tr>
 
         <tr>
Line 13: Line 15:
 
         <tr>
 
         <tr>
 
             <td><a href="http://www.ebi.ac.uk/biocat/index.html">Biocatalogue</a></td>
 
             <td><a href="http://www.ebi.ac.uk/biocat/index.html">Biocatalogue</a></td>
             <td>Software directory of general interest in molecular biology and genetics, at EBI</td>
+
             <td>EBI software directory of general interest in molecular biology and genetics.</td>
 
         </tr>
 
         </tr>
 
         <tr>
 
         <tr>
 
             <td><a href="http://www.bioexplorer.net/toolbar/">Bioexplorer Toolbar</a></td>
 
             <td><a href="http://www.bioexplorer.net/toolbar/">Bioexplorer Toolbar</a></td>
             <td>Fastest and easiest way to get the information you want from NCBI databases</td>
+
             <td>&nbsp;An easy toolbar for NCBI databases</td>
 
         </tr>
 
         </tr>
 
         <tr>
 
         <tr>
 
             <td>[[BioPAX]]</td>
 
             <td>[[BioPAX]]</td>
             <td>Develop a common exchange format for biological pathways data.</td>
+
             <td>&nbsp;Develop a common exchange format for biological pathways data.</td>
 
         </tr>
 
         </tr>
 
         <tr>
 
         <tr>
 
             <td><a href="http://www.unizh.ch/biostat/software.html">Biostatistics</a></td>
 
             <td><a href="http://www.unizh.ch/biostat/software.html">Biostatistics</a></td>
             <td>Biostatistics software</td>
+
             <td>&nbsp;Biostatistics software</td>
 
         </tr>
 
         </tr>
 
         <tr>
 
         <tr>

Revision as of 14:33, 15 January 2008

Genomics Software

See also: Biosoftware.org

Alscript by Barton Group Program to format multiple sequence alignments by Geof Barton group.
Amplify Amplify is a freeware Macintosh program for simulating and testing polymerase chain reactions (PCRs).
Biocatalogue EBI software directory of general interest in molecular biology and genetics.
Bioexplorer Toolbar  An easy toolbar for NCBI databases
BioPAX  Develop a common exchange format for biological pathways data.
Biostatistics  Biostatistics software
Biotech Resource Free softwares for moleular biology and structural biology
BLAST at NCBI Blast open source software
Cn3D Application that allows to view 3D structures, at NCBI
CLC Bio
Basic bioinformatics analyses and data management - free download
DomainParser A protein domain partition program
EMBOSS EMBOSS is a package of FREE open source software for sequence analysis
E-cell Simulating intracellular molecular processes of living cells project
eXtropia Several free web tools
Fasta Open source for Fasta
Genamics Database of freely-distributable and commercial tools for use in molecular biology
GeneDoc Multiple sequence alignment editor, analyzer & shading utility for windows
Genesis Information about GEneral NEural SImulation System
Globin Several free tools
GNU Free software foundation - several tools
HMMER HMMER 2.2 Profile hidden Markov models for biological sequence analysis 
NIH Image Image analysis program for Macintosh from NIH
MassARRAY™ RT Software (Sequenom)   
MatInspector Detection of transcription factor binding sites
Matt's Script Archive Several free Perl scripts
MB Shotcuts List of several free molecular biology softwares
MolBio Links Links to several molecular biology toos
Molecular Biology List of many free software package for Mac and PC
Multicoil Program to predict coiled coil regions in proteins
MUSCLE
Protein Multiple Sequence Alignment Software
MutationSurveyor & MutationExplorer Analysis of DNA variants, SNPs and mutations
Open Informatics Open source softwares
Phred, Phrap & Consed Sequence quality and assembly softwares
PolyPhred
Compares traces to identify heterozygous sites for SNPs
PhysioNet
Collection of physiologic simulation software
PovChem Visualization program for PDB protein structures
Programming Libraries Bioinformatics Programming Libraries, links to lots of sites and source codes
Prospect A threading-based protein structure prediction system
R - statistical package Statistical computing and graphics software
TreeView Tree drawing software for Apple Macintosh and Windows
SourceForge.net Several ready to use tool
Staden Package A excellent package for sequence analysis and assembly
Sequence Manipulation Free suite of sequence manipulation tools
WU-BLAST Washington university BLAST archives